packages update

Changes vendor from a target (it could still have a stand-alone target
but it wouldn't be used by the autospec target).

This change is needed because the Makefile is rewritten in the
autospec target but the ARCHIVES make variable is going to use the
value when make is executed. The common change causes the ARCHIVES
value to be eval'd during the autospec target execution in order for
the update from the vendor script to be seen by make.

The vendor script changes fix bugs in updating the options.conf and
Makefile. It also now handles returning the original ARCHIVES value as
well as prevent subshell scripts from outputting and adding badness
into the eval'd ARCHIVES variable.

Signed-off-by: William Douglas <william.douglas@intel.com>

Makefile.common

@@ -157,10 +157,6 @@ pullrebase:
 		fi \
 	fi
 
-# help vendor: Attempt to create an updated vendor tar archive if needed
-vendor: preautospec-checks pullrebase clean-old-content
-	@ $(TOPLVL)/projects/common/vendor.py $(firstword $(NEWURL) $(URL)) $(PKG_NAME) $(VND_BASE_URL)
-
 preautospec-checks:
 
 #help autospec: automatically generates a specfile. If there is
@@ -174,8 +170,8 @@ autospec: preautospec-checks pullrebase localreponotice clean-old-content
 		echo "Specfile already exists and was not created by autospec.py! Aborting."; \
 		exit 1; \
 	fi
+	$(eval ARCHIVES = $(shell $(TOPLVL)/projects/common/vendor.py '$(value ARCHIVES)' $(firstword $(NEWURL) $(URL)) $(PKG_NAME) $(VND_BASE_URL)))
 	@printf 'PKG_NAME := %s\nURL = %s\nARCHIVES = %s\n\ninclude ../common/Makefile.common\n' $(PKG_NAME) '$(firstword $(value NEWURL) $(value URL))' '$(value ARCHIVES)' > Makefile
-	@$(MAKE) vendor
 	python3 $(TOPLVL)/projects/autospec/autospec/autospec.py \
 		--target . \
 		--integrity \

blacklist

@@ -2,4 +2,3 @@
 /usr/lib/systemd/system/sysinit.target.wants/systemd-firstboot.service
 /usr/lib/systemd/system/sysinit.target.wants/systemd-hwdb-update.service
 /usr/lib/systemd/system/sysinit.target.wants/systemd-update-done.service
-/usr/lib/systemd/system/update-triggers.target.wants

packages

@@ -110,6 +110,7 @@ R-ISOcodes
 R-ISwR
 R-Iso
 R-JM
+R-KMsurv
 R-Lahman
 R-LearnBayes
 R-Luminescence
@@ -376,6 +377,7 @@ R-estimability
 R-etm
 R-evaluate
 R-evd
+R-exactRankTests
 R-expint
 R-expm
 R-expsmooth
@@ -414,6 +416,7 @@ R-fixest
 R-flashClust
 R-flexmix
 R-flexsurv
+R-flexsurvcure
 R-flextable
 R-float
 R-fontBitstreamVera
@@ -461,9 +464,13 @@ R-ggfortify
 R-ggjoy
 R-ggplot2
 R-ggplot2movies
+R-ggpubr
 R-ggrepel
 R-ggridges
+R-ggsci
+R-ggsignif
 R-ggstats
+R-ggtext
 R-ggvis
 R-gh
 R-git2r
@@ -483,6 +490,7 @@ R-gower
 R-gplots
 R-gridBase
 R-gridExtra
+R-gridtext
 R-gsl
 R-gss
 R-gtable
@@ -537,6 +545,7 @@ R-kernlab
 R-kimisc
 R-kit
 R-klaR
+R-km.ci
 R-kmi
 R-knitr
 R-ks
@@ -597,6 +606,7 @@ R-mathjaxr
 R-matrixStats
 R-matrixcalc
 R-maxLik
+R-maxstat
 R-mclogit
 R-mclust
 R-mcmc
@@ -843,6 +853,7 @@ R-rsdmx
 R-rstan
 R-rstanarm
 R-rstantools
+R-rstatix
 R-rstpm2
 R-rstudioapi
 R-rsvg
@@ -923,7 +934,9 @@ R-styler
 R-subplex
 R-subselect
 R-superpc
+R-survMisc
 R-survey
+R-survminer
 R-svUnit
 R-svglite
 R-sys
@@ -1175,6 +1188,7 @@ boto3
 botocore
 bovo
 box2d
+bpftool
 bpftrace
 breeze
 breeze-gtk
@@ -1544,7 +1558,6 @@ gc
 gcab
 gcc
 gcc11
-gcc14
 gcc7
 gcc8
 gcc9
@@ -4086,6 +4099,7 @@ pypi-kiwisolver
 pypi-krb5
 pypi-kubernetes
 pypi-langcodes
+pypi-language_data
 pypi-lark_parser
 pypi-latexcodec
 pypi-lavacli
@@ -4111,6 +4125,7 @@ pypi-lxml
 pypi-lz4
 pypi-macholib
 pypi-mako
+pypi-marisa_trie
 pypi-markdown
 pypi-markdown2
 pypi-markdown_exec
@@ -4130,6 +4145,7 @@ pypi-mkdocs
 pypi-mkdocs_autorefs
 pypi-mkdocs_exclude
 pypi-mkdocs_gen_files
+pypi-mkdocs_get_deps
 pypi-mkdocs_htmlproofer_plugin
 pypi-mkdocs_material_extensions
 pypi-mkdocs_monorepo_plugin
@@ -4195,6 +4211,7 @@ pypi-outcome
 pypi-overrides
 pypi-ovirt_imageio
 pypi-packaging
+pypi-packaging_legacy
 pypi-paginate
 pypi-paho_mqtt
 pypi-pandocfilters
@@ -4260,6 +4277,7 @@ pypi-portend
 pypi-posix_ipc
 pypi-poyo
 pypi-pre_commit
+pypi-pretty_errors
 pypi-prettytable
 pypi-probed
 pypi-progress
@@ -4455,6 +4473,7 @@ pypi-safetensors
 pypi-salib
 pypi-sanic_routing
 pypi-scikit_build
+pypi-scikit_build_core
 pypi-scikit_image
 pypi-scikit_learn
 pypi-scp
@@ -4584,6 +4603,7 @@ pypi-ttp
 pypi-twine
 pypi-typed_ast
 pypi-typeguard
+pypi-types_cffi
 pypi-types_colorama
 pypi-types_cryptography
 pypi-types_dataclasses
@@ -4641,6 +4661,7 @@ pypi-vsts_cd_manager
 pypi-waitress
 pypi-warlock
 pypi-watchdog
+pypi-watchfiles
 pypi-wbdata
 pypi-wcmatch
 pypi-wcwidth
@@ -4869,6 +4890,7 @@ rtmpdump
 rttr
 ruby
 runc
+rust-bindgen
 rustc
 rxvt-unicode
 s2tc

patchfilter.py

@@ -98,9 +98,13 @@ def zap_entire_file_end(filename):
     global files
     global files_chunks
     global files_header
+    files_to_remove = list()
     for file in files:
         if file.endswith(filename):
-            files.remove(file)                
+            # Don't modify the original list while iterating over it
+            files_to_remove.append(file)
+    for file in files_to_remove:
+        files.remove(file)                
             
 def zap_line_in_file_substring(filename, match):
     global header
@@ -186,7 +190,7 @@ def zap_empty_chunks():
     files_to_remove = list()
     for file in files:
         if file not in files_chunks:
-            files.remove(file)
+            files_to_remove.append(file)
             continue
         to_remove = list()
         for chunk in files_chunks[file]:

vendor.py

@@ -30,6 +30,7 @@ def vendor_check():
 
 def get_args():
     parser = argparse.ArgumentParser()
+    parser.add_argument('archives')
     parser.add_argument('url')
     parser.add_argument('name')
     parser.add_argument('git')
@@ -44,7 +45,7 @@ def setup_content(url):
     with open(outfile, 'wb') as cfile:
         cfile.write(response.content)
 
-    subprocess.run(f"tar xf {outfile}", shell=True, cwd=tdir, check=True)
+    subprocess.run(f"tar xf {outfile}", shell=True, cwd=tdir, check=True, stdout=subprocess.DEVNULL)
     os.remove(outfile)
     return tdir
 
@@ -60,32 +61,36 @@ def setup_cargo_vendor(path):
 def update_cargo_vendor(path, name, git):
     git_uri = os.path.join(git, name)
     vendor_path = os.path.join(path, 'vendor')
-    subprocess.run(f"git clone {git_uri} {vendor_path}", shell=True, check=True)
+    subprocess.run(f"git clone {git_uri} {vendor_path}", shell=True, check=True,
+                   stdout=subprocess.DEVNULL)
     vendor_git = os.path.join(vendor_path, '.git')
     if not os.path.isdir(vendor_git):
         # initialize a git repo
-        subprocess.run('git init .', cwd=vendor_path, shell=True, check=True)
+        subprocess.run('git init .', cwd=vendor_path, shell=True, check=True,
+                       stdout=subprocess.DEVNULL)
         subprocess.run(f"git remote add origin {git_uri}", cwd=vendor_path,
-                       shell=True, check=True)
+                       shell=True, check=True, stdout=subprocess.DEVNULL)
     backup_vendor_git = os.path.join(path, 'clear-linux-vendor-git')
     subprocess.run(f"cp -a {vendor_git} {backup_vendor_git}", cwd=path,
-                   shell=True, check=True)
+                   shell=True, check=True, stdout=subprocess.DEVNULL)
     shutil.rmtree(vendor_path)
-    subprocess.run('cargo vendor', cwd=path, shell=True, check=True)
+    subprocess.run('cargo vendor', cwd=path, shell=True, check=True,
+                   stdout=subprocess.DEVNULL)
     subprocess.run(f"cp -a {backup_vendor_git} {vendor_git}", cwd=path,
-                   shell=True, check=True)
+                   shell=True, check=True, stdout=subprocess.DEVNULL)
     repo = Repo(vendor_path)
     if not (len(repo.untracked_files) > 0 or repo.is_dirty()):
         return False
-    subprocess.run('git add .', cwd=vendor_path, shell=True, check=True)
+    subprocess.run('git add .', cwd=vendor_path, shell=True, check=True,
+                   stdout=subprocess.DEVNULL)
     subprocess.run('git commit -m "vendor update"', cwd=vendor_path,
-                   shell=True, check=True)
+                   shell=True, check=True, stdout=subprocess.DEVNULL)
     gmt = time.gmtime()
     tag = f"{gmt.tm_year}-{gmt.tm_mon:02d}-{gmt.tm_mday:02d}-{gmt.tm_hour:02d}-{gmt.tm_min:02d}-{gmt.tm_sec:02d}"
     subprocess.run(f"git tag {tag}", cwd=vendor_path, shell=True,
-                   check=True)
+                   check=True, stdout=subprocess.DEVNULL)
     subprocess.run(f"git push origin main:main {tag}", cwd=vendor_path,
-                   shell=True, check=True)
+                   shell=True, check=True, stdout=subprocess.DEVNULL)
     time.sleep(30)
     return tag
 
@@ -93,30 +98,35 @@ def update_cargo_vendor(path, name, git):
 def update_cargo_sources(name, tag):
     makefile = []
     options = []
-    archive_match = os.path.join('$(CGIT_BASE_URL)', 'vendor', name,
+    archive_match = os.path.join(r'\$\(CGIT_BASE_URL\)', 'vendor', name,
                                  'snapshot', name)
+    archive_replace = os.path.join('$(CGIT_BASE_URL)', 'vendor', name,
+                                   'snapshot', name)
     with open('Makefile', encoding='utf8') as mfile:
         for line in mfile.readlines():
             if line.startswith('ARCHIVES'):
-                if re.match(archive_match + r'[a-zA-Z0-9_\-.]+\.tar\.xz', line):
+                if re.search(archive_match + r'[a-zA-Z0-9_\-.]+\.tar\.xz', line):
                     new_archives = re.sub(archive_match + r'[a-zA-Z0-9_\-.]+\.tar\.xz',
-                                          f"{archive_match}-{tag}.tar.xz\n", line)
+                                          f"{archive_replace}-{tag}.tar.xz", line)
                 else:
-                    new_archives = f"ARCHIVES = {archive_match}-{tag}.tar.xz ./vendor\n"
+                    new_archives = f"{line[:-1]} {archive_replace}-{tag}.tar.xz ./vendor\n"
+                print(new_archives.replace('ARCHIVES = ', '', 1))
                 makefile.append(new_archives)
             else:
                 makefile.append(line)
     with open('Makefile', 'w', encoding='utf8') as mfile:
         mfile.writelines(makefile)
 
+    archive_match = os.path.join('http://localhost', 'cgit', 'vendor', name,
+                                 'snapshot', name)
     with open('options.conf', encoding='utf8') as ofile:
         for line in ofile.readlines():
             if line.startswith('archives'):
-                if re.match(archive_match + r'[a-zA-Z0-9_\-.]+\.tar\.xz', line):
+                if re.search(archive_match + r'[a-zA-Z0-9_\-.]+\.tar\.xz', line):
                     new_archives = re.sub(archive_match + r'[a-zA-Z0-9_\-.]+\.tar\.xz',
-                                          f"{archive_match}-{tag}.tar.xz\n", line)
+                                          f"{archive_match}-{tag}.tar.xz", line)
                 else:
-                    new_archives = f"achives = {archive_match}-{tag}.tar.xz ./vendor\n"
+                    new_archives = f"{line[:-1]} {archive_match}-{tag}.tar.xz ./vendor\n"
                 options.append(new_archives)
             else:
                 options.append(line)
@@ -125,11 +135,14 @@ def update_cargo_sources(name, tag):
 
 
 def main():
+    updated = False
+    args = get_args()
+
     vtype = vendor_check()
     if not vtype:
+        print(args.archives)
         return
 
-    args = get_args()
     tdir = setup_content(args.url)
     if vtype == 'cargo':
         vdir = setup_cargo_vendor(tdir)
@@ -137,7 +150,11 @@ def main():
             tag = update_cargo_vendor(vdir, args.name, args.git)
             if tag:
                 update_cargo_sources(args.name, tag)
+                updated = True
+    if not updated:
+        print(args.archives)
     shutil.rmtree(tdir)
 
+
 if __name__ == '__main__':
     main()