Update packages file for version 30030

Signed-off-by: clrbuilder <clrbuilder@intel.com>

Makefile.common

@@ -279,6 +279,7 @@ sources:
 	@$(MAKE) generateupstream; \
 	[ $$? -eq 0 ] && exit 0; \
 	nvr="$$(rpmspec --srpm -q --qf '%{NAME}\t%{VERSION}\t%{RELEASE}\n' $(SPECFILE))"; \
+	git -C $(TOPLVL)/projects/common fetch --tags >/dev/null 2>&1; \
 	latest_builds=$$(git -C $(TOPLVL)/projects/common tag -l | sort -rn); \
 	for b in $$latest_builds; do \
 		url="$(DOWNLOAD_MIRROR)/releases/$$b/clear/source/package-sources"; \

Makefile.toplevel

@@ -11,6 +11,7 @@ SHELL   = /bin/bash
 
 PKGS    = $(shell cat $(PACKAGES_FILE))
 PKGS_LOCAL = $(sort $(filter ${PKGS},$(subst packages/,,$(wildcard packages/*))))
+PKGS_ORPHANED = $(sort $(filter-out common ${PKGS},$(subst packages/,,$(wildcard packages/*))))
 
 proj_PKGS = $(addprefix proj_,$(PROJ_PKGS))
 clone_PKGS = $(addprefix clone_,$(PKGS))
@@ -128,11 +129,9 @@ pull: ${PULL_PKGS}
 #help clean-pkgs-dir: For packages that are no longer present in the distro,
 #help removes the associated package repos from the ./packages tree
 clean-pkgs-dir: $(PACKAGES_FILE)
-	@for p in `ls packages`; do \
-		if ! grep -wq "^$$p$$" "$<" && [ "$$p" != common ]; then \
-			echo "Removing $$p from packages, it is no longer in common/packages."; \
-			rm -rf packages/$$p; \
-		fi \
+	@for p in ${PKGS_ORPHANED}; do \
+		echo "Removing $$p from packages, it is no longer in common/packages."; \
+		rm -rf packages/$$p; \
 	done
 	@echo "packages directory cleaned";
 
@@ -232,7 +231,7 @@ autospecnew: preautospecnew-checks localreponotice
 			python3 $(TOPLVL)/projects/common/patchfilter.py <(git -C $(TOPLVL)/packages/$(NAME) format-patch -1 --stdout) > $(TOPLVL)/packages/$(NAME)/for-review.txt; \
 			printf "\n**\n"; \
 			printf "** NOTICE: A patch with changes is available in the file $(TOPLVL)/packages/$(NAME)/for-review.txt\n"; \
-			printf "** Please submit for code review with git send-email\n"; \
+			printf "** Please look through this file and if you are unsure, please submit for code review with git send-email\n"; \
 			printf "**\n\n"; \
 		fi; \
 	else \

packages

@@ -308,6 +308,7 @@ R-desc
 R-devtools
 R-dfoptim
 R-dichromat
+R-diffobj
 R-diffusionMap
 R-digest
 R-dimRed
@@ -387,6 +388,9 @@ R-fitdistrplus
 R-flashClust
 R-flexmix
 R-flexsurv
+R-fontBitstreamVera
+R-fontLiberation
+R-fontquiver
 R-forcats
 R-foreach
 R-forecast
@@ -407,6 +411,7 @@ R-gbm
 R-gbutils
 R-gclus
 R-gdata
+R-gdtools
 R-geepack
 R-geiger
 R-generics
@@ -986,6 +991,8 @@ apache-kafka
 apache-libcloud
 apache-maven
 apache-spark
+apache-tomcat
+apache-tomcat-dep
 apache-zookeeper
 apipkg
 appdirs
@@ -1002,6 +1009,7 @@ aria2
 ark
 armadillo
 arp-scan
+arpack-ng
 artikulate
 asciidoc
 asciinema
@@ -1647,6 +1655,7 @@ fontconfig
 fontforge
 fonttools
 fossil
+fox
 frameworkintegration
 freedv
 freeglut
@@ -1848,6 +1857,7 @@ hadoop-dep
 hamlib
 hammock
 haproxy
+hardinfo
 hardlink
 harfbuzz
 haskell-random
@@ -1859,6 +1869,7 @@ helloworld
 helm
 help2man
 hexchat
+hexedit
 hgtools
 hicolor-icon-theme
 hiredis
@@ -2446,6 +2457,7 @@ libsamplerate
 libsass
 libseccomp
 libsecret
+libshout
 libsigc++
 libsigsegv
 libsmbios
@@ -2596,6 +2608,7 @@ make
 makedepend
 man-db
 man-pages
+man-pages-posix
 marble
 mariadb
 mash
@@ -2689,6 +2702,166 @@ musl
 mutagen
 mutt
 mutter
+mvn-aether-core
+mvn-animal-sniffer
+mvn-antlr
+mvn-apache
+mvn-apache-jar-resource-bundle
+mvn-apache-rat
+mvn-asm
+mvn-autolink
+mvn-avalon-framework
+mvn-beanshell
+mvn-biz.aQute.bndlib
+mvn-bndlib
+mvn-build-helper-maven-plugin
+mvn-buildnumber-maven-plugin
+mvn-cdi-api
+mvn-checker-compat-qual
+mvn-checkstyle
+mvn-codehaus-jackson
+mvn-commons-beanutils
+mvn-commons-cli
+mvn-commons-codec
+mvn-commons-collections
+mvn-commons-compress
+mvn-commons-digester
+mvn-commons-httpclient
+mvn-commons-io
+mvn-commons-jxpath
+mvn-commons-lang
+mvn-commons-lang3
+mvn-commons-logging
+mvn-commons-parent
+mvn-commons-validator
+mvn-decentxml
+mvn-doxia
+mvn-doxia-sitetools
+mvn-enforcer
+mvn-error_prone_annotations
+mvn-extra-enforcer-rules
+mvn-file-management
+mvn-google
+mvn-google-collections
+mvn-guava
+mvn-guice
+mvn-hamcrest
+mvn-httpcomponents-client
+mvn-httpcomponents-core
+mvn-j2objc-annotations
+mvn-jackson-databind
+mvn-jansi
+mvn-java-boot-classpath-detector
+mvn-javax.inject
+mvn-jaxb-impl
+mvn-jdom
+mvn-jersey-apache-client4
+mvn-jersey-core
+mvn-jersey-json
+mvn-jetty
+mvn-jetty-util
+mvn-jsch
+mvn-jsch.agentproxy.connector-factory
+mvn-jsch.agentproxy.sshagent
+mvn-jsch.agentproxy.svnkit-trilead-ssh2
+mvn-jsch.agentproxy.usocket-nc
+mvn-jsoup
+mvn-jsr250-api
+mvn-jsr305
+mvn-jsr311-api
+mvn-junit
+mvn-kxml2
+mvn-logback-classic
+mvn-logback-core
+mvn-maven-aether-provider
+mvn-maven-artifact
+mvn-maven-artifact-manager
+mvn-maven-builder-support
+mvn-maven-bundle-plugin
+mvn-maven-compat
+mvn-maven-core
+mvn-maven-embedder
+mvn-maven-error-diagnostics
+mvn-maven-model
+mvn-maven-model-builder
+mvn-maven-monitor
+mvn-maven-parent
+mvn-maven-plugin-api
+mvn-maven-plugin-descriptor
+mvn-maven-plugin-parameter-documenter
+mvn-maven-plugin-registry
+mvn-maven-plugin-testing
+mvn-maven-plugin-tools
+mvn-maven-profile
+mvn-maven-project
+mvn-maven-reporting-api
+mvn-maven-reporting-exec
+mvn-maven-reporting-impl
+mvn-maven-repository-metadata
+mvn-maven-resolver
+mvn-maven-resolver-provider
+mvn-maven-scm
+mvn-maven-settings
+mvn-maven-shared
+mvn-maven-slf4j-provider
+mvn-maven-surefire
+mvn-maven-toolchain
+mvn-mockito-core
+mvn-modello
+mvn-mojo-parent
+mvn-mvnplugins
+mvn-nekohtml
+mvn-nexus-maven-plugins
+mvn-nexus-public
+mvn-objenesis
+mvn-openhtmltopdf-core
+mvn-openhtmltopdf-jsoup-dom-converter
+mvn-org.apache.felix.bundlerepository
+mvn-org.eclipse.sisu.inject
+mvn-org.eclipse.sisu.plexus
+mvn-org.osgi.compendium
+mvn-org.osgi.core
+mvn-oro
+mvn-pdfbox
+mvn-plexus
+mvn-plexus-archiver
+mvn-plexus-build-api
+mvn-plexus-cipher
+mvn-plexus-classworlds
+mvn-plexus-cli
+mvn-plexus-compiler
+mvn-plexus-containers
+mvn-plexus-i18n
+mvn-plexus-interactivity
+mvn-plexus-interpolation
+mvn-plexus-io
+mvn-plexus-resources
+mvn-plexus-utils
+mvn-plexus-velocity
+mvn-protobuf-java
+mvn-servlet-api
+mvn-siesta
+mvn-sisu
+mvn-sisu-maven-plugin
+mvn-slf4j
+mvn-snappy
+mvn-sonatype-aether
+mvn-sonatype-plexus-sec-dispatcher
+mvn-spice-zapper
+mvn-sqljet
+mvn-sslext
+mvn-struts
+mvn-trilead-ssh2
+mvn-tycho
+mvn-validation-api
+mvn-velocity
+mvn-wagon
+mvn-xbean-reflect
+mvn-xercesImpl
+mvn-xercesMinimal
+mvn-xml-apis
+mvn-xmlunit
+mvn-xmlunit-core
 mxnet
 mycroft-core
 mypaint-brushes
@@ -2785,6 +2958,7 @@ ocl-icd
 octave
 offlineimap
 oiio
+okteta
 okular
 olefile
 onig
@@ -3400,6 +3574,7 @@ perl-Role-Basic
 perl-Role-Tiny
 perl-Roman
 perl-Router-Simple
+perl-SGLMSpm
 perl-SMTP-Server
 perl-SQL-Abstract
 perl-SQL-Translator
@@ -3506,6 +3681,7 @@ perl-Text-Brew
 perl-Text-CSV
 perl-Text-CSV-Encoded
 perl-Text-CSV_XS
+perl-Text-CharWidth
 perl-Text-Diff
 perl-Text-FindIndent
 perl-Text-Format
@@ -3521,6 +3697,7 @@ perl-Text-TabularDisplay
 perl-Text-Template
 perl-Text-Trim
 perl-Text-Unidecode
+perl-Text-WrapI18N
 perl-Text-Wrapper
 perl-Tie-Cycle
 perl-Tie-IxHash
@@ -3597,6 +3774,7 @@ persistent
 pesign
 pexpect
 phonon
+phonon-vlc
 phoronix-test-suite
 php
 php-imagick
@@ -3772,6 +3950,7 @@ python-crfsuite
 python-dateutil
 python-dateutil-legacypython
 python-designateclient
+python-distutils-extra
 python-dldt
 python-editor
 python-future
@@ -4002,6 +4181,7 @@ setuptools_scm_git_archive
 setxkbmap
 sg3_utils
 shadow
+shapelib
 shared-mime-info
 sharutils
 shell

patchfilter.py

@@ -225,6 +225,14 @@ def main():
     zap_line_in_file_start(".spec", "Source99 :")
     zap_line_in_file_start(".spec", "Source0  :")
     zap_line_in_file_start(".spec", "export SOURCE_DATE_EPOCH")
+    zap_line_in_file_start(".spec", "export GCC_IGNORE_WERROR=1")
+    zap_line_in_file_start(".spec", "export AR=gcc-ar")
+    zap_line_in_file_start(".spec", "export RANLIB=gcc-ranlib")
+    zap_line_in_file_start(".spec", "export NM=gcc-nm")
+    zap_line_in_file_start(".spec", "export CFLAGS=\"$CFLAGS -O3 -ffat-lto-objects -flto=4 \"")
+    zap_line_in_file_start(".spec", "export FCFLAGS=\"$CFLAGS -O3 -ffat-lto-objects -flto=4 \"")
+    zap_line_in_file_start(".spec", "export FFLAGS=\"$CFLAGS -O3 -ffat-lto-objects -flto=4 \"")
+    zap_line_in_file_start(".spec", "export CXXFLAGS=\"$CXXFLAGS -O3 -ffat-lto-objects -flto=4 \"")
     zap_line_in_file_start(".spec", "%setup -q -n ")
     zap_line_in_file_start(".spec", "URL      :")
     zap_line_in_file_start(".spec", "Version  :")
@@ -236,6 +244,7 @@ def main():
     zap_line_in_file_start(".spec", "data components for the")
     zap_line_in_file_start(".spec", "locales components for the")
     zap_line_in_file_start(".spec", "license components for the")
+    zap_line_in_file_start(".spec", "doc components for the")
     zap_line_in_file_start(".spec", "Group: Default")
     zap_line_in_file_start(".spec", "export http_proxy=http://127.0.0.1:9/")
     zap_line_in_file_start(".spec", "export https_proxy=http://127.0.0.1:9/")
@@ -246,13 +255,16 @@ def main():
     zap_line_in_file_start(".spec", "Group: Binaries")
     zap_line_in_file_start(".spec", "Group: Data")
     zap_line_in_file_start(".spec", "Group: Libraries")
+    zap_line_in_file_start(".spec", "Group: Documentation")
     zap_line_in_file_start(".spec", "export LANG=C")
     zap_line_in_file_start(".spec", "%description lib")
     zap_line_in_file_start(".spec", "%description bin")
     zap_line_in_file_start(".spec", "%description data")
+    zap_line_in_file_start(".spec", "%description doc")
     zap_line_in_file_start(".spec", "%description locales")
     zap_line_in_file_start(".spec", "%description dev")
     zap_line_in_file_start(".spec", "%description license")
+    zap_line_in_file_start(".spec", "%package doc")
  
     zap_line_in_file_start("b/Makefile", "URL =")
     zap_line_in_file_start("b/Makefile", "PKG_NAME :=")