Update packages file for version 21670

Signed-off-by: clrbuilder <clrbuilder@intel.com>

Makefile.common

@@ -119,17 +119,25 @@ $(SRPMFILE): $(SPECFILE) $(__allsources) localreponotice
 	@$(MAKE) spdxcheck
 	$(MOCK) --buildsrpm --source=./ --spec=$(SPECFILE) --result=results/ --no-cleanup-after --uniqueext=$(PKG_NAME)
 
-# Do a git fetch and a git rebase rather than a git pull so aborting
-# the git pull at a password prompt doesn't leave local changes stashed
-# Do the the git status dance so we only apply a stash we create
+# Do a git fetch and a git rebase to apply local commits on top of latest
+# commits from the remote. A git fetch/rebase is used rather than a git pull so
+# aborting the git pull at a password prompt doesn't leave local changes
+# stashed. Do the git status dance so we only apply a stash we create. Note
+# that a fetch/rebase is not attempted if the remote 'origin' is not
+# initialized locally, or if the remote contains no commits.
 pullrebase:
-	if [ -z "$$SKIP_GIT" ] && [ -e .git ]; then \
-		set -x ; \
+	@if [ -z "$$SKIP_GIT" ] && [ -e .git ]; then \
+		if ! git rev-parse --verify --quiet origin/master > /dev/null; then \
+			echo "Remote not yet initialized. Continuing."; \
+			exit 0; \
+		fi; \
+		echo "Fetching origin"; \
 		git fetch; \
 		if ! git rev-parse --verify --quiet FETCH_HEAD > /dev/null; then \
 			echo "No commits exist in remote. Continuing."; \
 			exit 0; \
 		fi; \
+		echo "Rebasing to origin/master"; \
 		if git status --porcelain | grep -q '^.[^?]'; \
 		then \
 			git stash save; \
@@ -151,11 +159,16 @@ autospec: pullrebase localreponotice
 		exit 1; \
 	fi
 	@printf 'PKG_NAME := %s\nURL = %s\nARCHIVES = %s\n\ninclude ../common/Makefile.common\n' $(PKG_NAME) '$(firstword $(value NEWURL) $(value URL))' '$(value ARCHIVES)' > Makefile
-	python3 $(TOPLVL)/projects/autospec/autospec/autospec.py -t . --integrity \
-		${NON_INTERACTIVE} --config "$(AUTOSPEC_CONF)" ${SKIP_GIT} \
-		$(firstword $(NEWURL) $(URL)) --name $(PKG_NAME) ${CLEANUP} \
-		$${SETVERSION:+ -v $${SETVERSION}} -a $(ARCHIVES) \
-		-m $(MOCK_CONFIG_VAL)
+	python3 $(TOPLVL)/projects/autospec/autospec/autospec.py \
+		--target . \
+		--integrity \
+		--config "$(AUTOSPEC_CONF)" \
+		--name $(PKG_NAME) \
+		--archives $(ARCHIVES) \
+		--mock-config $(MOCK_CONFIG_VAL) \
+		$${SETVERSION:+ --version $${SETVERSION}} \
+		${NON_INTERACTIVE} ${SKIP_GIT} ${CLEANUP} \
+		$(firstword $(NEWURL) $(URL));
 	@$(MAKE) spdxcheck
 	@$(MAKE) checkblacklist
 	@if [ -e update_changelog.sh ] && [ -z "$$SKIP_GIT" ] ; then \

Makefile.toplevel

@@ -208,7 +208,16 @@ autospecnew: localreponotice
 			$(call subjectprefix,$(NAME)); \
 		); \
 		printf 'PKG_NAME := %s\nURL = %s\nARCHIVES = %s\n\ninclude ../common/Makefile.common\n' $(NAME) '$(value URL)' '$(value ARCHIVES)' > $(TOPLVL)/packages/$(NAME)/Makefile; \
-		python3 $(TOPLVL)/projects/autospec/autospec/autospec.py --integrity -t packages/$(NAME) --config $(AUTOSPEC_CONF) $(URL) --name $(NAME) -m $(MOCK_CONFIG_VAL); \
+		python3 $(TOPLVL)/projects/autospec/autospec/autospec.py \
+			--target packages/$(NAME) \
+			--integrity \
+			--config "$(AUTOSPEC_CONF)" \
+			--name $(NAME) \
+			--archives $(ARCHIVES) \
+			--mock-config $(MOCK_CONFIG_VAL) \
+			$${SETVERSION:+ --version $${SETVERSION}} \
+			${NON_INTERACTIVE} ${SKIP_GIT} ${CLEANUP} \
+			$(URL); \
 		$(TOPLVL)/projects/common/checkblacklist.sh $(TOPLVL)/projects/common/blacklist $(TOPLVL)/packages/${NAME}/results/*.rpm; \
 	else \
 		echo "$(NAME) already exists at $(TOPLVL)/packages/$(NAME)"; \

packages

@@ -31,117 +31,450 @@ Pygments
 QtAwesome
 QtPy
 R
+R-AER
 R-BH
+R-Brobdingnag
+R-CVST
 R-Cairo
+R-CircStats
+R-ClustVarLV
+R-Cubist
 R-DBI
+R-DBItest
+R-DEoptim
+R-DEoptimR
+R-DRR
+R-DT
+R-DendSer
+R-DistributionUtils
+R-Ecdat
+R-Ecfun
+R-EnvStats
+R-FNN
+R-Formula
+R-GGally
+R-GPArotation
+R-GeneralizedHyperbolic
+R-GlobalOptions
+R-Hmisc
+R-ICS
+R-ICSNP
 R-IRdisplay
 R-IRkernel
+R-ISwR
+R-Lahman
+R-LearnBayes
+R-Matching
 R-MatrixModels
+R-ModelMetrics
+R-NLP
+R-NMF
+R-NMOF
+R-PKI
+R-R.methodsS3
+R-R.oo
+R-R.utils
+R-R2Cuba
+R-R2HTML
 R-R6
+R-RANN
 R-RColorBrewer
 R-RCurl
+R-RJSONIO
+R-ROCR
+R-RSQLite
+R-RSclient
+R-RUnit
+R-RandomFields
+R-RandomFieldsUtils
 R-Rcpp
+R-RcppArmadillo
 R-RcppEigen
+R-RcppProgress
+R-RcppRoll
+R-Rmpfr
+R-Rmpi
+R-Rtsne
+R-SDMTools
+R-SQUAREM
+R-Sleuth2
+R-SnowballC
 R-SparseM
+R-StanHeaders
+R-SuppDists
 R-TH.data
+R-TRAMPR
+R-TSP
 R-TTR
+R-TeachingDemos
+R-VGAM
+R-VGAMdata
+R-VIM
 R-XML
+R-abind
+R-acepack
+R-actuar
+R-ade4
+R-analogue
+R-ape
+R-argparse
+R-arm
 R-assertthat
 R-backports
 R-base64enc
+R-bayesm
+R-bayesplot
+R-bdsmatrix
+R-betareg
+R-bibtex
+R-bindr
+R-bindrcpp
+R-bipartite
+R-bit
+R-bit64
 R-bitops
+R-blob
 R-brew
+R-brglm
+R-bridgesampling
+R-brms
+R-broom
+R-caTools
+R-callr
 R-car
+R-carData
+R-caret
+R-cclust
+R-cellranger
+R-checkmate
 R-chron
+R-circlize
+R-classInt
+R-cli
+R-clue
+R-clustMixType
+R-coda
+R-coin
 R-colorspace
+R-colourpicker
+R-combinat
 R-commonmark
+R-compositions
+R-corpcor
+R-corrplot
+R-cowplot
 R-crayon
+R-crosstalk
 R-curl
+R-cvTools
+R-data.table
+R-dbarts
+R-dbplyr
+R-ddalpha
+R-deSolve
+R-debugme
 R-deepnet
+R-deldir
+R-dendextend
 R-desc
 R-devtools
+R-dfoptim
 R-dichromat
+R-diffusionMap
 R-digest
+R-dimRed
+R-diptest
+R-dlm
+R-doMC
+R-doMPI
+R-doParallel
+R-doRNG
+R-doSNOW
+R-dotCall64
+R-dplyr
+R-drc
+R-dtw
+R-dygraphs
 R-dynlm
 R-e1071
+R-earth
+R-ellipse
+R-energy
 R-evaluate
+R-expint
+R-expm
+R-fastICA
+R-fastcluster
+R-fastmatch
+R-fda
+R-ff
+R-fields
+R-findpython
+R-fitdistrplus
+R-flashClust
+R-flexmix
+R-forcats
 R-foreach
 R-formatR
+R-fpc
+R-futile.logger
+R-futile.options
+R-gam
+R-gamm4
+R-gbm
+R-gclus
+R-gdata
+R-geometry
+R-getopt
+R-ggjoy
 R-ggplot2
+R-ggplot2movies
+R-ggridges
 R-git2r
 R-glmnet
+R-glue
+R-gmodels
+R-gmp
+R-goftest
+R-gower
+R-gplots
+R-gridBase
+R-gridExtra
 R-gtable
 R-gtools
+R-haven
+R-hexbin
 R-highr
 R-hms
+R-htmlTable
 R-htmltools
+R-htmlwidgets
 R-httpuv
 R-httr
+R-ica
+R-igraph
+R-inline
+R-inum
+R-ipred
+R-irlba
 R-iterators
+R-jpeg
 R-jsonlite
+R-kernlab
+R-klaR
 R-knitr
 R-labeling
+R-labelled
+R-laeken
+R-lambda.r
+R-lars
+R-latticeExtra
+R-lava
 R-lazyeval
+R-lda
+R-leaps
+R-lfe
+R-libcoin
+R-lle
 R-lme4
 R-lmtest
+R-locfit
+R-loo
+R-lpSolve
 R-lubridate
+R-magic
 R-magrittr
 R-manipulate
 R-mapproj
 R-maps
 R-maptools
 R-markdown
+R-matrixStats
+R-matrixcalc
+R-maxLik
+R-mclust
+R-mda
+R-memisc
 R-memoise
+R-mi
 R-microbenchmark
 R-mime
+R-miniUI
+R-minpack.lm
 R-minqa
+R-miscTools
+R-mixtools
+R-mlbench
+R-mnormt
 R-mockery
+R-modelr
+R-modeltools
 R-mondate
 R-multcomp
+R-multiwayvcov
 R-munsell
+R-mvoutlier
 R-mvtnorm
+R-network
 R-neuralnet
+R-nleqslv
 R-nloptr
+R-nortest
+R-numDeriv
+R-nycflights13
 R-openssl
+R-openxlsx
+R-optparse
+R-packrat
+R-pamr
+R-party
+R-partykit
+R-pbapply
 R-pbdZMQ
 R-pbkrtest
+R-pcaPP
+R-pdfCluster
+R-permute
+R-phylogram
 R-pillar
 R-pkgconfig
+R-pkgmaker
+R-plm
+R-plogr
+R-plotly
+R-plotmo
+R-plotrix
+R-pls
 R-plyr
+R-pmml
 R-png
+R-polspline
+R-polyclip
+R-polycor
+R-prabclus
+R-pracma
 R-praise
+R-prettyunits
+R-princurve
+R-prodlim
+R-profileModel
+R-progress
 R-proto
+R-proxy
 R-pryr
+R-psych
+R-purrr
+R-pxweb
+R-qap
 R-quadprog
 R-quantmod
 R-quantreg
+R-questionr
 R-randomForest
+R-ranger
+R-raster
+R-rasterVis
+R-readr
+R-readxl
+R-recipes
+R-registry
+R-rematch
 R-repr
+R-reprex
+R-reshape
 R-reshape2
+R-reticulate
+R-rgenoud
+R-rgl
+R-rio
 R-rlang
 R-rmarkdown
+R-rms
+R-rngtools
+R-robCompositions
+R-robustbase
+R-rootSolve
 R-roxygen2
 R-rprojroot
+R-rrcov
+R-rsconnect
+R-rstan
+R-rstanarm
+R-rstantools
 R-rstudioapi
 R-rversions
+R-rvest
+R-sROC
+R-sampling
 R-sandwich
 R-scales
+R-scatterplot3d
+R-segmented
+R-selectr
+R-sem
+R-seriation
+R-setRNG
+R-sfsmisc
+R-sgeostat
+R-shape
 R-shiny
+R-shinyjs
+R-shinystan
+R-shinythemes
+R-slam
+R-sm
+R-smoother
+R-sn
+R-sna
+R-snow
+R-snowfall
+R-som
 R-sourcetools
 R-sp
+R-spData
+R-spam
+R-spatstat
+R-spatstat.data
+R-spatstat.utils
+R-spdep
+R-spls
 R-statmod
+R-statnet.common
 R-stringi
 R-stringr
+R-strucchange
+R-subselect
+R-superpc
+R-survey
+R-systemfit
 R-tau
+R-tclust
+R-tensor
+R-tensorA
 R-testit
 R-testthat
+R-threejs
 R-tibble
+R-tidyr
+R-tidyselect
+R-tidyverse
 R-timeDate
 R-tis
+R-tm
+R-topicmodels
+R-treatSens
 R-tree
+R-trimcluster
+R-truncnorm
 R-tseries
+R-tsne
+R-utf8
 R-uuid
+R-vcd
+R-vegan
+R-viridis
 R-viridisLite
+R-visNetwork
 R-whisker
 R-withr
 R-xml2
@@ -176,6 +509,7 @@ WebOb
 WebTest
 Werkzeug
 Whoosh
+Z3
 abireport
 absl-py
 accountsservice
@@ -210,7 +544,9 @@ asio
 asn1crypto
 aspell
 aspell-en
+astor
 astroid
+astunparse
 at
 at-spi2-atk
 at-spi2-core
@@ -225,6 +561,7 @@ augeas
 authconfig
 autoconf
 autoconf-archive
+autoconf213
 autofs
 autogen
 automake
@@ -232,6 +569,7 @@ awscli
 azure-configs
 babeltrace
 babl
+backcall
 backports.functools_lru_cache
 backports.ssl_match_hostname
 backports.weakref
@@ -263,6 +601,7 @@ boto
 boto3
 botocore
 bridge-utils
+brotli
 bsdiff
 btrfs-progs
 bundle-chroot-builder
@@ -323,6 +662,7 @@ clr-systemd-config
 clr-update-triggers
 clr-wallpapers
 clrtrust
+clucene-core
 clutter
 clutter-gst
 clutter-gtk
@@ -347,9 +687,11 @@ compat-libical-soname2
 compat-libpng-soname12
 compat-libwebp-soname6
 compat-llvm-soname4
+compat-llvm-soname5
 compat-mpfr-soname4
 compat-opencv-soname32
 compat-opencv-soname33
+compat-protobuf-soname14
 compat-readline
 component
 compositeproto
@@ -372,6 +714,7 @@ cpuid
 cracklib
 crcmod
 createrepo_c
+cri-containerd
 cri-o
 cri-tools
 cryptography
@@ -499,6 +842,7 @@ functools32
 fuse
 futures
 garcon
+gast
 gawk
 gc
 gcab
@@ -606,6 +950,7 @@ grig
 grilo
 grilo-plugins
 groff
+grpcio
 grub
 gsettings-desktop-schemas
 gsl
@@ -651,6 +996,7 @@ httpretty
 hub
 hunspell
 hwloc
+hyperscan
 hyperstart
 hypothesis
 i2c-tools
@@ -662,6 +1008,7 @@ icon-naming-utils
 icu4c
 idna
 imagesize
+imapfilter
 indent
 infiniband-diags
 iniparse
@@ -699,11 +1046,13 @@ ister
 itstool
 iw
 ixpdimm_sw
+jansson
 jedi
 jedi-vim
 jemalloc
 jmespath
 joe
+josepy
 jq
 json-c
 json-glib
@@ -715,6 +1064,8 @@ jupyter-notebook-gist
 jupyter_client
 jupyter_console
 jupyter_core
+jupyterlab
+jupyterlab_launcher
 kafka-dep
 kbd
 kbproto
@@ -722,6 +1073,7 @@ kexec-tools
 keyring
 keyutils
 khal
+kiwisolver
 kmod
 koji
 krb5
@@ -843,7 +1195,9 @@ libpthread-stubs
 libpwquality
 librepo
 librsvg
+librtlsdr
 libsamplerate
+libsass
 libseccomp
 libsecret
 libsigc++
@@ -851,6 +1205,7 @@ libsndfile
 libsolv
 libsoup
 libspectre
+libsrtp
 libssh
 libssh2
 libstoragemgmt
@@ -955,6 +1310,7 @@ motd-update
 motif
 mozjs
 mozjs38
+mozjs52
 mpc
 mpfr
 mpg123
@@ -978,7 +1334,6 @@ nbconvert
 nbformat
 nbsphinx
 ncurses
-ncurses-compat
 ndctl
 ndg_httpsclient
 neofetch
@@ -1296,12 +1651,14 @@ qtsvg
 qttools
 qttranslations
 qtvirtualkeyboard
+qtwayland
 qtwebchannel
 qtwebsockets
 qtx11extras
 qtxmlpatterns
 quagga
 quilt
+ragel
 randrproto
 rdma-core
 re2c
@@ -1330,6 +1687,7 @@ rxvt-unicode
 s2tc
 s3transfer
 samba
+sassc
 satyr
 sbc
 sbsigntools
@@ -1392,6 +1750,7 @@ strace
 subunit
 sudo
 sure
+suricata
 swig
 swupd-client
 swupd-overdue
@@ -1502,6 +1861,7 @@ wget
 wheel
 which
 widgetsnbextension
+woff2
 wol
 wpa_supplicant
 wrapt

user-setup.sh

@@ -149,4 +149,4 @@ fi
 echo -en "\n************************\n"
 
 echo 'Workspace has been set up in the "clearlinux" directory'
-echo 'NOTE: logout and log back in or run "newgrp kvm" to finalize the setup process'
+echo 'NOTE: logout and log back in to finalize the setup process'