Update packages file for version 31960

Signed-off-by: clrbuilder <clrbuilder@intel.com>

packages

@@ -339,6 +339,7 @@ R-drc
 R-dtplyr
 R-dtw
 R-dygraphs
+R-dynamicTreeCut
 R-dynlm
 R-e1071
 R-eRm
@@ -1120,6 +1121,7 @@ bazel
 bc
 bcache-tools
 bcc
+bcftools
 bcrypt
 bdftopcf
 beautifulsoup4
@@ -1218,6 +1220,7 @@ ccid
 cdparanoia
 ceph
 ceph-deploy
+cereal
 certbot
 certifi
 cffi
@@ -1355,8 +1358,6 @@ compat-llvm-soname7
 compat-mariadb-soname18
 compat-mpfr-soname4
 compat-nettle-soname6
-compat-opencv-soname32
-compat-opencv-soname33
 compat-openssl-soname-10
 compat-proj-soname13
 compat-protobuf-soname14
@@ -1868,6 +1869,7 @@ hostname
 hplip
 html5lib
 htop
+htslib
 httpd
 httplib2
 httpretty
@@ -2040,7 +2042,7 @@ kbreakout
 kbruch
 kcachegrind
 kcalc
-kcalcore
+kcalendarcore
 kcalutils
 kcharselect
 kcmutils
@@ -2724,6 +2726,7 @@ multimon-ng
 multipath-tools
 mumble
 munch
+munge
 munkres
 muparser
 murrine
@@ -3410,6 +3413,7 @@ nautilus
 nbconvert
 nbformat
 nbsphinx
+nbval
 ncdu
 ncurses
 ncurses-compat

patchfilter.py

@@ -287,6 +287,7 @@ def main():
     zap_line_in_file("b/options.conf", "# disable parallelization during build")
     zap_line_in_file("b/options.conf", "broken_parallel_build = false")
     zap_line_in_file("b/options.conf", "# this package is a library compatability package and only ships versioned library files")
+    zap_line_in_file("b/options.conf", "# this package is a library compatibility package and only ships versioned library files")
     zap_line_in_file("b/options.conf", "compat = false")
     zap_line_in_file("b/options.conf", "# set conservative build flags")
     zap_line_in_file("b/options.conf", "conservative_flags = false")
@@ -324,6 +325,8 @@ def main():
     zap_line_in_file("b/options.conf", "use_lto = false")
     zap_line_in_file("b/options.conf", "# require package verification for build")
     zap_line_in_file("b/options.conf", "verify_required = true")
+    zap_line_in_file("b/options.conf", "# do not generate debuginfo for this package")
+    zap_line_in_file("b/options.conf", "+nodebug = false")
 
     zap_line_in_file("b/buildreq_add", "# This file contains additional build requirements that did not get")
     zap_line_in_file("b/buildreq_add", "# picked up automatically. One name per line, no whitespace.")
@@ -349,6 +352,8 @@ def main():
     zap_plus_line_in_file("symbols32")
 
     zap_entire_file("b/whatrequires")
+    zap_entire_file("b/versions")
+    zap_entire_file("b/.gitignore")
 
     zap_empty_chunks()